Choi, Yohan

Owned by UKY CCS RCD
Aug 06, 2024
1 min read

Research Activities

Our research includes various genomics (RNA sequencing, single-cell RNA sequencing, and spatial RNA mapping) and proteomics (tandem mass spectrometry and IMS) using ovarian tissues in rodent ovaries and follicular aspirates from the human ovary. Data obtained from all these analyses are huge and not able to be stored on personal computers and also need to be analyzed in HPC.

 

Projects

The Impact of Leukocyte-Derived OSM on Ovulation and Luteinization in the Human Ovary
R03HD109497
NIH
PI: Yohan Choi

The Impact of Leukocyte-derived Cytokines on Ovulation and Luteinization in Humans
R01HD096077
NIH
PI: Yohan Choi

Postdocs, graudate RAs, and undergraduates will be added.

 

Computational Methods

All the methods analyzing genomics and proteomics data will be used, including Nextflow, Singularity, Docker, and custom software provided from assay companies.

 

Software

Nextflow, Singularity, Docker, STAR, FeatureCounts, UMItools, and Seurat.

Center for Computational Sciences