Bowtie

Software Description:

Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).

Software Home Page: Bowtie

Software Documentation:

To run this software in a Linux environment on LCC,
run the command(s):

#To load module version 1.2.2
module load ccs/conda/bowtie-1.2.2

#To load module version 2-2.3.5
module load ccs/conda/bowtie2-2.3.5

#To unload module per version
conda deactivate