HTSeq

Software Description:

Analysing high-throughput sequencing data with Python

HTSeq is a Python package that provides infrastructure to process data from high-throughput sequencing assays.

• Please see the chapter A tour through HTSeq first for an overview on the kind of analysis you can do with HTSeq and the design of the package, and then look at the reference documentation.

• While the main purpose of HTSeq is to allow you to write your own analysis scripts, customized to your needs, there are also a couple of stand-alone scripts for common tasks that can be used without any Python knowledge. See the Scripts section in the overview below for what is available.

Software Home Page: HTSeq

Software Documentation:

To run this software in a Linux environment on LCC,
run the command(s):

#To load module
module load ccs/conda/htseq-0.11.2

#To unload module
conda deactivate