bpp

Software Description:

Bayesian analysis of genomic sequence data under the multispecies coalescent mode.

BPP currently implements four methods:

• Estimation of the parameters of species divergence times and population sizes under the multi-species coalescent (MSC) model when the species phylogeny is given (Rannala and Yang, 2003)

• Inference of the species tree when the assignments are given by the user (Rannala and Yang, 2017)

• Species delimitation using a user-specified guide tree (Yang and Rannala, 2010; Rannala and Yang, 2013)

• Joint species delimitation and species tree estimation (Yang and Rannala 2014)

Software Home Page: bpp

Software Documentation:

To run this software in a Linux environment on LCC,
run the command(s):

#To load module
module load ccs/bpp/bpp-4.1.4

#To unload module
module unload ccs/bpp/bpp-4.1.4