Abyss

Owned by UKY CCS RCD
Aug 08, 2024
1 min read

Software Description:

ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size. The parallel version is implemented using MPI and is capable of assembling larger genomes.

To assemble transcriptome data, see Trans-ABySS.

Software Home Page: Here

Software Documentation:

To run this software in a Linux environment on LCC,
run the command(s):

#To Load module
module load ccs/conda/abyss-2.2.4
#To unload module
conda deactivate




Center for Computational Sciences