Canu

Software Description:

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequel or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps:

• Detect overlaps in high-noise sequences using MHAP
• Generate corrected sequence consensus
• Trim corrected sequences
• Assemble trimmed corrected sequences

Software Home Page: Canu

Software Documentation:

To run this software in a Linux environment on LCC,
run the command(s):

#To load module version 1.4-1
module load ccs/conda/canu-1.4-1

#To load module version 1.9
module unload ccs/conda/canu-1.9

#To unload module per version
conda deactivate

#To load module
module load ccs/canu/canu
OR
module load ccs/canu/canu-1.9-r9818
OR
module load ccs/canu/1.8

#To unload module per version
module unload ccs/canu/canu

module unload ccs/canu/canu-1.9-r9818
module unload ccs/canu/1.8