phyluce

Software Description:

phyluce (phy-loo-chee) is a software package that was initially developed for analyzing data collected from ultraconserved elements in organismal genomes (see References and http://ultraconserved.org for additional information).

The package now includes a number of tools spanning:

• the assembly of raw read data to contigs
• the separation of UCE loci from assembled contigs
• parallel alignment generation, alignment trimming, and alignment data summary methods in preparation for analysis
• alignment and SNP calling using UCE or other types of raw-read data.

Software Home Page: phyluce

Software Documentation:

To run this software in a Linux environment on LCC,
run the command(s):

#To load module
module load ccs/conda/phyluce-1.6.7

#To unload module
conda deactivate