phyluce

Owned by UKY CCS RCD
Aug 08, 2024
1 min read

Software Description:

phyluce (phy-loo-chee) is a software package that was initially developed for analyzing data collected from ultraconserved elements in organismal genomes (see References and http://ultraconserved.org for additional information).

The package now includes a number of tools spanning:

  • the assembly of raw read data to contigs
  • the separation of UCE loci from assembled contigs
  • parallel alignment generation, alignment trimming, and alignment data summary methods in preparation for analysis
  • alignment and SNP calling using UCE or other types of raw-read data.


Software Home Page: phyluce



Software Documentation:

To run this software in a Linux environment on LCC,
run the command(s):

#To load module
module load ccs/conda/phyluce-1.6.7

#To unload module
conda deactivate

Center for Computational Sciences