Ensembl-vep-99.2

Software Description:

Ensembl Variant Effect Predictor (VEP)

VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.
Simply input the coordinates of your variants and the nucleotide changes to find out the:

Genes and Transcripts affected by the variants
Location of the variants (e.g. upstream of a transcript, in coding sequence, in non-coding RNA, in regulatory regions)
A consequence of your variants on the protein sequence (e.g. stop gained, missense, stop lost, frameshift)
Known variants that match yours, and associated minor allele frequencies from the 1000 Genomes Project

Software Home Page: Ensembl VEP

Software Documentation:

To run this software in a Linux environment on LCC,
run the command(s):

#To load module
module load ccs/conda/ensembl-vep-99.2

#To unload module
conda deactivate