HPC Software List
- UKY CCS RCD
Owned by UKY CCS RCD
Aug 08, 2024
- Abyss
- ADMIXTURE
- AMBER
- AMBER tools
- Anaconda
- Ansys
- Ansys_structures
- ArrayFire
- ASE
- Augustus
- Augustus-braker
- autodock_vina-1.1.2
- Automake
- Bcftools
- bcl2fastq2
- beagle-lib
- beast
- bedtools
- bioconductor-ChAMP
- bioconductor-DESeq
- bioconductor-edgeR
- Blast
- Blat
- bonito-0.0.8
- Boost
- Bowtie
- bpp
- BRAKER
- BUSCO
- BWA
- Canu
- CD-HIT
- Cell Ranger
- CHARMM
- CrossMap
- Cuda
- Cufflinks
- Cutadapt
- deep-md
- Diamond
- dispy
- dock6
- Eigen
- Ensembl-vep-99.2
- Exonerate
- FastQC
- FEniCS
- FFTW
- GAMESS
- GATK
- Gaussian
- Gizmo
- Gmsh
- Gromacs
- GSL
- HDF5
- HISAT2
- HTSeq
- impi
- Intel Compilers
- intelpython3_full
- ipyrad
- Java JDK
- JellyFish
- jmodeltest
- Julia
- kallisto
- Lammps
- Libtool
- Lumerical
- MACS2
- HyPhy
- make
- Maker
- Maple
- MashMap
- MATLAB
- matplotlib
- Meryl
- meshio-4.0.9
- migrate-n
- Miniconda3
- minimap2
- Molpro
- mono
- mothur
- mpi4py
- MrBayes
- MultiQC
- NAMD
- NetworkX
- NextFlow
- NOTUNG
- NumPy
- NWChem
- OpenMPI
- OpenSees
- ORCA
- OrthoFinder
- ParaView
- Perl
- PGI
- pgi-cuda
- phyluce
- Picard
- Pilon
- Plink
- PLUMED
- PRANK-170427
- proovread
- Python
- Qiime2
- QuantumEspresso
- R
- RAxML
- RAxML-NG
- R-SaTScan
- Rsem
- Samtools
- SAS
- SciPy
- Shasta
- Singularity
- SpliceV
- SRA toolkit
- Stacks
- Star
- StringTie
- Structure
- Subread
- TelSeq
- tk
- TopHat
- TotalView
- Trim Galore
- Trinity
- Trinotate
- ucsc-fatotwobit
- VASP
- VCFtools
- WhatsHap
- MapSplice
- VisIt
, multiple selections available,
Center for Computational Sciences