jmodeltest
- UKY CCS RCD
Software Description:
jModelTest is a tool to carry out the statistical selection of best-fit models of nucleotide substitution. It implements five different model selection strategies: hierarchical and dynamical likelihood ratio tests (hLRT and dLRT), Akaike and Bayesian information criteria (AIC and BIC), and a decision theory method (DT). It also provides estimates of model selection uncertainty, parameter importances and model-averaged parameter estimates, including model-averaged tree topologies. jModelTest 2 includes High-Performance Computing (HPC) capabilities and additional features like new strategies for tree optimization, model-averaged phylogenetic trees (both topology and branch lenght), heuristic filtering and automatic logging of user activity.
Software Home Page: jmodeltest
Software Documentation:
To run this software in a Linux environment on LCC,
run the command(s):
#To load module module load ccs/jmodeltest/2.1.10 #To unload module module unload ccs/jmodeltest/2.1.10
Center for Computational Sciences