bcl2fastq2

Software Description:

The Illumina bcl2fastq2 Conversion Software demultiplexes

sequencing data and converts base call(BCL) files into FASTQfiles.

For every cycle of a sequencing run, the real-time analysis(RTA)

the software generates a BCL file containing base calls and associated

quality scores(Q-scores). Most data analysis applications require FASTQ

files as input.

Software Home Page: bcl2fastq2

Software Documentation:

To run this software in a Linux environment on LCC,
run the command(s):

#To load module
module load ccs/bcl2fastq2/2.20.0.422

#To unload module
module unload ccs/bcl2fastq2/2.20.0.422